Linux
Centos，如何在 R 上安裝“topicmodels”包？
我在筆記型電腦上使用 Linux CentOS 6.6 版，並且嘗試將“topicmodels”包安裝到我的 R 環境中。
所以我使用了 install.packages(“topicmodels”) 命令，但不幸的是它不起作用。
以下是我收到的日誌消息：
* installing *source* package ‘topicmodels’ ... ** package ‘topicmodels’ successfully unpacked and MD5 sums checked ** libs gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c cokus.c -o cokus.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c common.c -o common.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ctm.c -o ctm.o ctm.c:29:25: error: gsl/gsl_rng.h: No such file or directory ctm.c:30:28: error: gsl/gsl_vector.h: No such file or directory ctm.c:31:28: error: gsl/gsl_matrix.h: No such file or directory In file included from ctm.c:33: gsl-wrappers.h:32: warning: type defaults to ‘int’ in declaration of ‘gsl_vector’ gsl-wrappers.h:32: error: expected ‘;’, ‘,’ or ‘)’ before ‘*’ token gsl-wrappers.h:33: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:34: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:35: warning: type defaults to ‘int’ in declaration of ‘gsl_matrix’ gsl-wrappers.h:35: error: expected ‘;’, ‘,’ or ‘)’ before ‘*’ token gsl-wrappers.h:36: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:37: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:38: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:39: warning: type defaults to ‘int’ in declaration of ‘gsl_vector’ gsl-wrappers.h:39: error: expected ‘;’, ‘,’ or ‘)’ before ‘*’ token gsl-wrappers.h:40: warning: type defaults to ‘int’ in declaration of ‘gsl_matrix’ gsl-wrappers.h:40: error: expected ‘;’, ‘,’ or ‘)’ before ‘*’ token gsl-wrappers.h:41: error: expected declaration specifiers or ‘...’ before ‘gsl_vector’ gsl-wrappers.h:42: error: expected declaration specifiers or ‘...’ before ‘gsl_matrix’ gsl-wrappers.h:43: error: expected declaration specifiers or ‘...’ before ‘gsl_vector’ gsl-wrappers.h:44: error: expected declaration specifiers or ‘...’ before ‘gsl_matrix’ gsl-wrappers.h:45: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:46: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:47: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:48: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:49: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:50: warning: type defaults to ‘int’ in declaration of ‘gsl_vector’ gsl-wrappers.h:50: error: expected ‘;’, ‘,’ or ‘)’ before ‘*’ token gsl-wrappers.h:51: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:52: error: expected ‘)’ before ‘*’ token gsl-wrappers.h:53: error: expected ‘)’ before ‘*’ token In file included from ctm.c:34: ctm.h:40: error: expected specifier-qualifier-list before ‘gsl_matrix’ ctm.h:55: error: expected specifier-qualifier-list before ‘gsl_matrix’ ctm.c: In function ‘new_llna_model’: ctm.c:45: error: ‘llna_model’ has no member named ‘mu’ ctm.c:45: warning: implicit declaration of function ‘gsl_vector_calloc’ ctm.c:46: error: ‘llna_model’ has no member named ‘cov’ ctm.c:46: warning: implicit declaration of function ‘gsl_matrix_calloc’ ctm.c:47: error: ‘llna_model’ has no member named ‘inv_cov’ ctm.c:48: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c: In function ‘new_llna_ss’: ctm.c:62: error: ‘llna_ss’ has no member named ‘mu_ss’ ctm.c:63: error: ‘llna_ss’ has no member named ‘cov_ss’ ctm.c:64: error: ‘llna_ss’ has no member named ‘beta_ss’ ctm.c:64: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:65: error: ‘llna_ss’ has no member named ‘ndata’ ctm.c: In function ‘del_llna_ss’: ctm.c:73: warning: implicit declaration of function ‘gsl_vector_free’ ctm.c:73: error: ‘llna_ss’ has no member named ‘mu_ss’ ctm.c:74: warning: implicit declaration of function ‘gsl_matrix_free’ ctm.c:74: error: ‘llna_ss’ has no member named ‘cov_ss’ ctm.c:75: error: ‘llna_ss’ has no member named ‘beta_ss’ ctm.c: In function ‘reset_llna_ss’: ctm.c:81: warning: implicit declaration of function ‘gsl_matrix_set_all’ ctm.c:81: error: ‘llna_ss’ has no member named ‘beta_ss’ ctm.c:82: error: ‘llna_ss’ has no member named ‘cov_ss’ ctm.c:83: warning: implicit declaration of function ‘gsl_vector_set_all’ ctm.c:83: error: ‘llna_ss’ has no member named ‘mu_ss’ ctm.c:84: error: ‘llna_ss’ has no member named ‘ndata’ ctm.c: In function ‘write_ss’: ctm.c:90: error: ‘llna_ss’ has no member named ‘cov_ss’ ctm.c:90: error: too many arguments to function ‘printf_matrix’ ctm.c:91: error: ‘llna_ss’ has no member named ‘beta_ss’ ctm.c:91: error: too many arguments to function ‘printf_matrix’ ctm.c:92: error: ‘llna_ss’ has no member named ‘mu_ss’ ctm.c:92: error: too many arguments to function ‘printf_vector’ ctm.c: In function ‘corpus_init’: ctm.c:103: error: ‘gsl_rng’ undeclared (first use in this function) ctm.c:103: error: (Each undeclared identifier is reported only once ctm.c:103: error: for each function it appears in.) ctm.c:103: error: ‘r’ undeclared (first use in this function) ctm.c:103: warning: implicit declaration of function ‘gsl_rng_alloc’ ctm.c:103: error: ‘gsl_rng_taus’ undeclared (first use in this function) ctm.c:108: warning: implicit declaration of function ‘gsl_rng_set’ ctm.c:113: warning: implicit declaration of function ‘vset’ ctm.c:113: error: ‘llna_model’ has no member named ‘mu’ ctm.c:114: warning: implicit declaration of function ‘mset’ ctm.c:114: error: ‘llna_model’ has no member named ‘cov’ ctm.c:116: warning: implicit declaration of function ‘matrix_inverse’ ctm.c:116: error: ‘llna_model’ has no member named ‘cov’ ctm.c:116: error: ‘llna_model’ has no member named ‘inv_cov’ ctm.c:117: error: ‘llna_model’ has no member named ‘log_det_inv_cov’ ctm.c:117: warning: implicit declaration of function ‘log_det’ ctm.c:117: error: ‘llna_model’ has no member named ‘inv_cov’ ctm.c:126: warning: implicit declaration of function ‘gsl_rng_uniform’ ctm.c:131: warning: implicit declaration of function ‘minc’ ctm.c:131: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:135: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:137: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:139: warning: implicit declaration of function ‘mget’ ctm.c:139: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:143: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:145: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:146: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:149: warning: implicit declaration of function ‘gsl_rng_free’ ctm.c: In function ‘random_init’: ctm.c:164: error: ‘gsl_rng’ undeclared (first use in this function) ctm.c:164: error: ‘r’ undeclared (first use in this function) ctm.c:164: error: ‘gsl_rng_taus’ undeclared (first use in this function) ctm.c:170: error: ‘llna_model’ has no member named ‘mu’ ctm.c:171: error: ‘llna_model’ has no member named ‘cov’ ctm.c:180: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:183: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:183: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:185: error: ‘llna_model’ has no member named ‘cov’ ctm.c:185: error: ‘llna_model’ has no member named ‘inv_cov’ ctm.c:186: error: ‘llna_model’ has no member named ‘log_det_inv_cov’ ctm.c:186: error: ‘llna_model’ has no member named ‘inv_cov’ ctm.c: In function ‘write_llna_model’: ctm.c:207: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:212: error: ‘llna_model’ has no member named ‘mu’ ctm.c:212: error: too many arguments to function ‘printf_vector’ ctm.c:214: error: ‘llna_model’ has no member named ‘cov’ ctm.c:214: error: too many arguments to function ‘printf_matrix’ ctm.c:216: error: ‘llna_model’ has no member named ‘inv_cov’ ctm.c:216: error: too many arguments to function ‘printf_matrix’ ctm.c:219: error: ‘llna_model’ has no member named ‘log_det_inv_cov’ ctm.c:224: error: ‘llna_model’ has no member named ‘log_beta’ ctm.c:224: error: too many arguments to function ‘printf_matrix’ make: *** [ctm.o] Error 1 ERROR: compilation failed for package ‘topicmodels’ * removing ‘/usr/lib64/R/library/topicmodels’ The downloaded source packages are in ‘/tmp/RtmpnduiXI/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning message:在 install.packages(“topicmodels”) 中：安裝包 ’topicmodels’ 的退出狀態非零
以下是我的 R 版本的詳細資訊：
平台 x86_64-redhat-linux-gnu arch x86_64
os linux-gnu system x86_64, linux-gnu status major 3 minor 1.2
year 2014 month 10
day 31 svn rev 66913
language R version.string R version 3.1.2 (2014-10-31 ) 暱稱南瓜頭盔
你知道為什麼我不能在 R 中安裝這個包嗎？你能給我一些解決這個問題的建議嗎？
您至少需要安裝
gsl-devel包含 GNU 科學庫的 . 那應該解決ctm.c:29:25: error: gsl/gsl_rng.h: No such file or directory ctm.c:30:28: error: gsl/gsl_vector.h: No such file or directory ctm.c:31:28: error: gsl/gsl_matrix.h: No such file or directory錯誤。