在 RedHat 上更新/重新安裝包失敗

我正在嘗試在 RedHat 伺服器上重新安裝 bcftools，從 bcftools 版本 1.10 更新到至少 1.14：

cat /etc/redhat-release

給

Red Hat Enterprise Linux Server release 7.9 (Maipo)

bcftools --version產量

bcftools 1.10.2
Using htslib 1.10.2
Copyright (C) 2019 Genome Research Ltd.
License Expat: The MIT/Expat license
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

所以我知道bcftools已經安裝了。

我試圖更新：

user@server:~$ sudo yum update bcftools
Loaded plugins: auto-update-debuginfo, product-id, search-disabled-repos, subscription-manager
Package(s) bcftools available, but not installed.
No packages marked for update

這顯然沒有用。

當我嘗試更新時

Loaded plugins: auto-update-debuginfo, product-id, search-disabled-repos, subscription-manager
Resolving Dependencies
--> Running transaction check
---> Package bcftools.x86_64 0:1.9-3.el7 will be installed
--> Processing Dependency: libhts.so.2()(64bit) for package: bcftools-1.9-3.el7.x86_64
--> Running transaction check
---> Package htslib.x86_64 0:1.9-5.el7 will be installed
--> Finished Dependency Resolution

Dependencies Resolved

========================================================================================================
Package                  Arch                   Version                     Repository            Size
========================================================================================================
Installing:
bcftools                 x86_64                 1.9-3.el7                   epel                 609 k
Installing for dependencies:
htslib                   x86_64                 1.9-5.el7                   epel                 343 k

Transaction Summary
========================================================================================================
Install  1 Package (+1 Dependent package)

Total download size: 953 k
Installed size: 2.6 M
Is this ok [y/d/N]: y
Downloading packages:
(1/2): bcftools-1.9-3.el7.x86_64.rpm                                             | 609 kB  00:00:00     
(2/2): htslib-1.9-5.el7.x86_64.rpm                                               | 343 kB  00:00:00     
--------------------------------------------------------------------------------------------------------
Total                                                                   1.3 MB/s | 953 kB  00:00:00     
Running transaction check
Running transaction test
Transaction test succeeded
Running transaction
 Installing : htslib-1.9-5.el7.x86_64                                                              1/2 
 Installing : bcftools-1.9-3.el7.x86_64                                                            2/2 
 Verifying  : bcftools-1.9-3.el7.x86_64                                                            1/2 
 Verifying  : htslib-1.9-5.el7.x86_64                                                              2/2 

Installed:
 bcftools.x86_64 0:1.9-3.el7                                                                           

Dependency Installed:
 htslib.x86_64 0:1.9-5.el7                                                                             

Complete!

但之後會顯示相同的 bcftools 舊版本 1.10.2。

如何更新 bcftools？

看起來您想要的版本在儲存庫中尚不可用。也許這可以幫助你：

RedHat/CentOS 依賴項：

sudo yum install -y autoconf automake make gcc perl-Data-Dumper zlib-devel bzip2 bzip2-devel xz-devel curl-devel openssl-devel bsdtar wget

wget -qO- https://github.com/samtools/bcftools/releases/download/1.15/bcftools-1.15.tar.bz2 | bsdtar -xvf- -C /tmp/
cd /tmp/bcftools-1.15
make install
ln -s /usr/local/bin/bcftools /bin/bcftools
bcftools --version

我希望它有用。

引用自：https://unix.stackexchange.com/questions/697249